UCSD Computational RNA Research Group
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FastR Software
Bioinformatics Lab
PFastR: Profile based Fast RNA Search with Sequence Filters
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Family Search Type [
?
] :
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Keyword Search
>
(We will filter the select box
as you type
)
PFastR (Profile-based FastR) Inputs
Family Type to query against:
All
Cis-reg;
Cis-reg; frameshift;
Cis-reg; frameshift_element;
Cis-reg; IRES;
Cis-reg; leader;
Cis-reg; riboswitch;
Cis-reg; thermoregulator;
Gene;
Gene; antisense;
Gene; miRNA;
Gene; ribozyme;
Gene; rRNA;
Gene; snRNA;
Gene; snRNA; guide; C/D-box;
Gene; snRNA; guide; CD-box;
Gene; snRNA; guide; H/ACA-box;
Gene; snRNA; guide; HACA-box;
Gene; snRNA; guide; scaRNA;
Gene; snRNA; splicing;
Gene; sRNA;
Gene; tRNA;
Intron;
Family to query against:
Target input type [
?
] :
File
Input
Target File of sequences to search:
Input sequence in fasta format:
p-value cutoff
Search Focus:
Accuracy [
?
]
Efficiency [
?
]
Email Address to send results:
<-- Please fill in email to run.
Supplementary data for
ROC Curves
as well an
excel spreadsheet
with full statistics is available.
Supported by:
Comments or Questions?
